Videos are posted as .zip files and will need be downloaded and upziped to be accessed

Lecture Videos and Mathematica Notebooks

  1. Introduction to Mathematical Epidmeiology (Notes)
  2. The SIR Model (Video & Mathematica & Notes)
  3. Distributed Delays (Video & Mathematica & Notes)
  4. Transmission Heterogenities (Video & Mathematica & Notes)
  5. Spatial Models (Video & Mathematica & Notes)
  6. Household Model (Vdieo)
  7. Stoachstic Epidemic Models (Video & Mathematica & Notes)
  8. Network Models (Video & Mathematica & Notes)
  9. Interventions (Video 1 & Video 2 & Mathematica & Notes)
  10. Model Parameterization (Video 1 & Video 2 & Data1 & Data2 & Mathematica & Notes)
  11. Genomic Epidemiology (Video 1 & Video 2 & Notes)

Case Studies

  1. Rabies in V. vulpus: Case study, Mathematica, Video1 Video2

    Summary Due: March 11

  2. Ebola Virus Outbreak: Case study, Mathematica, Video1, Video2)

    Summary Due: March 25

  3. COVID-19 Evolution: Case study, Matematica 1, Mathematica 2, Video 1, Video 2, Video 3

    Summary Due: April 8

Mathematical Primers

  • 1.1 Accessing Raspberry Pi with VNC (Instructions)
  • 1.2 Introduction to Mathematica (Webpage)
  • 2.1 Numerical Integration (Video & Notes)
  • 2.2 Equilibria and Stability Analyses (Video & Notes)
  • 3.1 The Exponential Distribution, Convolutions and the Erlang Distribution (Video & Notes)
  • 3.2 Eigenvalues, Eigenvectors, and Eigendecomposition (Video & Notes)
  • 5.1 Perturbation method for solving algerbraic equations (Video & Notes)
  • 7.1 Gillespie Algorithms (Video & Notes)

Challenge Question Solutions

  • Challenge 2
  • Challenge 3
  • Challenge 4
  • Challenge 5
  • Challenge 10
  • Challenge 11